Package: rangeMapper 2.0.3

Mihai Valcu

rangeMapper: A Platform for the Study of Macro-Ecology of Life History Traits

Tools for generation of (life-history) traits and diversity maps on hexagonal or square grids. Valcu et al.(2012) <doi:10.1111/j.1466-8238.2011.00739.x>.

Authors:Mihai Valcu [aut, cre], James Dale [aut], Joan Maspons [ctb]

rangeMapper_2.0.3.tar.gz
rangeMapper_2.0.3.zip(r-4.7)rangeMapper_2.0.3.zip(r-4.6)rangeMapper_2.0.3.zip(r-4.5)
rangeMapper_2.0.3.tgz(r-4.6-any)rangeMapper_2.0.3.tgz(r-4.5-any)
rangeMapper_2.0.3.tar.gz(r-4.7-any)rangeMapper_2.0.3.tar.gz(r-4.6-any)
rangeMapper_2.0.3.tgz(r-4.6-emscripten)
manual.pdf |manual.html
DESCRIPTION
card.svg |card.png
rangeMapper/json (API)

# Install 'rangeMapper' in R:
install.packages('rangeMapper', repos = c('https://ornitho-logics.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/mpio-be/rangemapper/issues

Datasets:

On CRAN:

Conda:

assemblage-levelecologygloballife-history-traitsraster-cellspecies

5.66 score 7 stars 33 scripts 352 downloads 1 mentions 11 exports 41 dependencies

Last updated from:575046b8b3. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK314
source / vignettesOK266
linux-release-x86_64OK293
macos-release-arm64OK252
macos-oldrel-arm64OK333
windows-develOK404
windows-releaseOK251
windows-oldrelOK412
wasm-releaseOK187

Exports:%>%dbDisconnectread_wrensrmap_add_biormap_add_rangesrmap_connectrmap_preparermap_save_maprmap_save_subsetrmap_to_sfst_thin

Dependencies:bitbit64blobcachemclassclassIntclicodetoolscpp11data.tableDBIdigeste1071exactextractrfastmapfuturefuture.applyglobalsglueKernSmoothlatticelifecyclelistenvmagrittrMASSmemoiseparallellypkgconfigprogressrproxyrasterRcpprlangRSQLites2sfspterraunitsvctrswk

Case studies (GEB_739_sm_AppendixS2-S5)
General project setup | Raw data: wrens breeding range distribution and life history | Case study 1: Different biodiversity hotspots and their congruence. | 1. Set parameters | 2. Primary maps and thresholds | 3. Congruence subsets and congruence maps | 3.1 Subsets | 3.2 Threshold Maps | 4. Maps: load and display | Case study 2: Geographical variation of the range size~ body size slope | 1. The range size~ body size slope map | 2. Maps: load and display | Case study 3: The influence of cell size on body size ~ species richness slope | 1. assemblage level median body size ~ species richness slope for varying cell sizes. | 2. Plot regression parameters for different cell sizes | Case study 4: The influence of range size on the relationship between species richness and body size | 2. Make subset tables for multiple range size intervals. | 2. Make median body mass maps for all subset tables. | 3. Get maps and run Run assemblage body size ~ species_richness regression | 4. Plot regression slope for different quantile-based range size intervals

Last update: 2021-02-25
Started: 2021-02-05

rangeMapper
Packages and data | A bare bone rangeMapper project | Do larger wren species have smaller clutches ? | Does the slope clutch size ~ body mass vary spatially?

Last update: 2021-02-25
Started: 2021-02-05

Readme and manuals

Help Manual

Help pageTopics
demdem
Add non-spatial tables to a rangeMapper projectrmap_add_bio rmap_add_bio,rmapConnection,ANY,character,missing-method rmap_add_bio,rmapConnection,data.frame,character,character-method rmap_add_bio,rmapConnection,data.table,character,character-method rmap_add_bio,rmapConnection,sf,character,character-method
Add polygons to a rangeMapper projectrmap_add_ranges rmap_add_ranges,rmapConnection,sf,character-method
rangeMapper connectrmap_connect
Define a canvas and process rangesrmap_prepare rmap_prepare,rmapConnection,character,numeric,missing-method rmap_prepare,rmapConnection,character,numeric,numeric-method
Save mapsrmap_save_map rmap_save_map,rmapConnection,character,character,character,character,character-method rmap_save_map,rmapConnection,character,character,character,missing,character-method rmap_save_map,rmapConnection,character,Raster,missing,missing,character-method rmap_save_map,rmapConnection,function,character,ANY,character,character-method rmap_save_map,rmapConnection,function,character,ANY,missing,character-method rmap_save_map,rmapConnection,function,character,character,character,character-method rmap_save_map,rmapConnection,function,character,character,missing,character-method rmap_save_map,rmapConnection,missing,missing,missing,character,character-method rmap_save_map,rmapConnection,missing,missing,missing,missing,missing-method
Save subsetsrmap_save_subset rmap_save_subset,rmapConnection,character-method
Get 'sf' data.frame-s.rmap_to_sf rmap_to_sf,rmapConnection,character,missing-method rmap_to_sf,rmapConnection,missing,character-method rmap_to_sf,rmapConnection,missing,missing-method
Thinning of polygonal gridsst_thin
Wrens Life history.read_wrens wrens